ioncopy

Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

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Description file content

Package
ioncopy
Type
Package
Title
Calling Copy Number Alterations in Amplicon Sequencing Data
Version
2.0.1
Date
2018-01-15
Author
Jan Budczies, Eva Romanovsky
Maintainer
Jan Budczies
Imports
stats, multtest, shiny
Description
Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) .
License
GPL-3
Packaged
2018-01-16 12:09:04 UTC; evka
NeedsCompilation
no
Repository
CRAN
Date/Publication
2018-01-16 15:38:59 UTC

install.packages('ioncopy')

2.0.1

a month ago

Jan Budczies

GPL-3

Imports

stats, multtest, shiny

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