ioncopy

Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls.

Total

4,592

Last month

126

Last week

41

Average per day

4

Daily downloads

Total downloads

Description file content

Package
ioncopy
Type
Package
Title
Calling Copy Number Alterations in Amplicon Sequencing Data
Version
2.0
Date
2017-11-08
Author
Jan Budczies, Eva Romanovsky
Maintainer
Jan Budczies
Imports
stats, multtest, shiny
Description
Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls.
License
GPL-3
Packaged
2017-12-05 21:31:20 UTC; evka
NeedsCompilation
no
Repository
CRAN
Date/Publication
2017-12-05 21:39:19 UTC

install.packages('ioncopy')

2.0

8 days ago

Jan Budczies

GPL-3

Imports

stats, multtest, shiny

Discussions