kmer

Fast K-Mer Counting and Clustering for Biological Sequence Analysis

Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis.

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Description file content

Package
kmer
Type
Package
Title
Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Version
1.1.2
Author
Shaun Wilkinson [aut, cre]
Maintainer
Shaun Wilkinson
Description
Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) for a review of k-mer counting methods and applications for biological sequence analysis.
License
GPL-3
Encoding
UTF-8
LazyData
true
URL
BugReports
http://github.com/shaunpwilkinson/kmer/issues
Imports
openssl, phylogram, Rcpp (>= 0.12.13)
Suggests
ape (>= 4.0), dendextend, knitr, rmarkdown, testthat
LinkingTo
Rcpp
VignetteBuilder
knitr
RoxygenNote
6.1.1
NeedsCompilation
yes
Packaged
2019-05-20 01:35:03 UTC; shaun
Repository
CRAN
Date/Publication
2019-05-20 05:10:03 UTC

install.packages('kmer')

1.1.2

6 days ago

http://github.com/shaunpwilkinson/kmer

Shaun Wilkinson

GPL-3

Imports

openssl, phylogram, Rcpp (>= 0.12.13)

Suggests

ape (>= 4.0), dendextend, knitr, rmarkdown, testthat

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