landsepi

Landscape Epidemiology and Evolution

A spatio-temporal stochastic model to assess resistance deployment strategies against plant pathogens. The model is based on stochastic geometry for describing the landscape and the resistant hosts, a dispersal kernel for the dissemination of the pathogen, and a SEIR (Susceptible-Exposed-Infectious-Removed) architecture to simulate plant response to disease. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.

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Description file content

Package
landsepi
Type
Package
Encoding
UTF-8
Title
Landscape Epidemiology and Evolution
Version
0.0.7
Date
2019-01-14
Author
Loup Rimbaud [aut], Julien Papaix [aut], Jean-Francois Rey [cre]
Maintainer
Jean-Francois Rey
Description
A spatio-temporal stochastic model to assess resistance deployment strategies against plant pathogens. The model is based on stochastic geometry for describing the landscape and the resistant hosts, a dispersal kernel for the dissemination of the pathogen, and a SEIR (Susceptible-Exposed-Infectious-Removed) architecture to simulate plant response to disease. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) .
URL
BugReports
https://gitlab.paca.inra.fr/CSIRO-INRA/landsepi/issues
License
GPL (>= 2) | file LICENSE
LazyData
true
BuildVignettes
true
NeedsCompilation
yes
Biarch
true
SystemRequirements
C++11, gsl, gdal >= 1.11.0
Depends
methods, utils, grDevices (>= 3.0.0), graphics (>= 3.0.0), R (>= 3.3.0), Rcpp (>= 0.9.0), rgdal (>= 1.2-16)
Imports
sp (>= 1.0-17), stats (>= 3.0.2), Matrix, MASS, rgeos, maptools, fields, splancs, sf
Collate
'invlogit.R' 'logit.R' 'RcppExports.R' 'graphLand.R' 'periodic_cov.R' 'multiN.R' 'AgriLand.R' 'HLIRdynamics.R' 'demo_landsepi.R' 'landsepi.R' 'plotevolQR.R' 'simul_landsepi.R'
LinkingTo
Rcpp
RoxygenNote
6.1.1
Packaged
2019-01-14 12:01:45 UTC; jfrey
Repository
CRAN
Date/Publication
2019-01-14 12:50:13 UTC

install.packages('landsepi')

0.0.7

2 months ago

https://gitlab.paca.inra.fr/CSIRO-INRA/landsepi

Jean-Francois Rey

GPL (>= 2) | file LICENSE

Depends on

methods, utils, grDevices (>= 3.0.0), graphics (>= 3.0.0), R (>= 3.3.0), Rcpp (>= 0.9.0), rgdal (>= 1.2-16)

Imports

sp (>= 1.0-17), stats (>= 3.0.2), Matrix, MASS, rgeos, maptools, fields, splancs, sf

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