mapfuser

Construct Consensus Genetic Maps and Estimate Recombination Rates

Construct consensus genetic maps with LPmerge, see Endelman and Plomion (2014) <doi:10.1093/bioinformatics/btu091> and model the relationship between physical distance and genetic distance using thin-plate regression splines, see Wood (2003) <doi:10.1111/1467-9868.00374>. Perform quality control on input data and visualise intermediate steps.

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Description file content

Package
mapfuser
Type
Package
Title
Construct Consensus Genetic Maps and Estimate Recombination Rates
Version
0.1.2
Author
Dennis van Muijen, Ram Kumar Basnet, Nathalie J. Dek
Maintainer
Dennis van Muijen
Description
Construct consensus genetic maps with LPmerge, see Endelman and Plomion (2014) and model the relationship between physical distance and genetic distance using thin-plate regression splines, see Wood (2003) . Perform quality control on input data and visualise intermediate steps.
Depends
igraph
Imports
dplyr, ggplot2, mgcv, doParallel, parallel, foreach, stringi, plotly, visNetwork, LPmerge, lazyeval, tidyr
License
GPL-3
Encoding
UTF-8
LazyData
true
NeedsCompilation
no
Packaged
2017-10-10 09:59:13 UTC; dmu
RoxygenNote
6.0.1
Suggests
knitr, rmarkdown
VignetteBuilder
knitr
Repository
CRAN
Date/Publication
2017-10-10 10:13:54 UTC

install.packages('mapfuser')

0.1.2

10 days ago

Dennis van Muijen

GPL-3

Depends on

igraph

Imports

dplyr, ggplot2, mgcv, doParallel, parallel, foreach, stringi, plotly, visNetwork, LPmerge, lazyeval, tidyr

Suggests

knitr, rmarkdown

Discussions