metaboGSE

Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data

Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1093/bioinformatics/bty929>).

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Description file content

Package
metaboGSE
Type
Package
Title
Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data
Version
1.2.1
Depends
R (>= 3.4.0), sybil (>= 2.0.4), AnnotationDbi (>= 1.32.3), ape (>= 3.3), topGO (>= 2.24.0)
Suggests
glpkAPI (>= 1.3.0), clpAPI (>= 1.2.7), KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown
Imports
utils, stats, methods, parallel, grDevices, graphics, Matrix, sys
Packaged
2018-12-12 09:33:23 UTC; ttran
Author
Van Du T. Tran [aut, cre], Marco Pagni [aut]
Maintainer
Van Du T. Tran
Description
Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) ).
License
GPL-3
Encoding
UTF-8
LazyData
true
RoxygenNote
6.1.0
VignetteBuilder
knitr
NeedsCompilation
no
Repository
CRAN
Date/Publication
2018-12-12 15:10:03 UTC

install.packages('metaboGSE')

1.2.1

2 months ago

Van Du T. Tran

GPL-3

Depends on

R (>= 3.4.0), sybil (>= 2.0.4), AnnotationDbi (>= 1.32.3), ape (>= 3.3), topGO (>= 2.24.0)

Imports

utils, stats, methods, parallel, grDevices, graphics, Matrix, sys

Suggests

glpkAPI (>= 1.3.0), clpAPI (>= 1.2.7), KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown

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