momentuHMM

Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models

Extended tools for analyzing telemetry data using generalized hidden Markov models. These include data pre-processing and visualization, fitting HMMs to location and auxiliary biotelemetry or environmental data, biased and correlated random walk movement models, multiple imputation for incorporating location measurement error and missing data, user-specified design matrices and constraints for covariate modelling of parameters, decoding of the state process, visualization of fitted models, model checking and selection, and simulation. See McClintock and Michelot (2017) <arXiv:1710.03786>.

Total

2,782

Last month

221

Last week

61

Average per day

7

Daily downloads

Total downloads

Description file content

Package
momentuHMM
Type
Package
Title
Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models
Version
1.4.0
Date
2018-02-27
Depends
R (>= 2.10)
Author
Brett McClintock, Theo Michelot
Maintainer
Brett McClintock
Description
Extended tools for analyzing telemetry data using generalized hidden Markov models. These include data pre-processing and visualization, fitting HMMs to location and auxiliary biotelemetry or environmental data, biased and correlated random walk movement models, multiple imputation for incorporating location measurement error and missing data, user-specified design matrices and constraints for covariate modelling of parameters, decoding of the state process, visualization of fitted models, model checking and selection, and simulation. See McClintock and Michelot (2017) .
License
GPL-3
LazyData
TRUE
Imports
Rcpp, doParallel, foreach, numDeriv, CircStats, crawl, ggmap, ggplot2, mitools, moveHMM, raster, argosfilter, car, mvtnorm, boot, sp, MASS, Brobdingnag, gstat, conicfit, nleqslv, survival, qdapRegex, geosphere, LaplacesDemon, prodlim
LinkingTo
Rcpp, RcppArmadillo
Suggests
testthat, setRNG, knitr, splines, splines2
RoxygenNote
6.0.1
NeedsCompilation
yes
VignetteBuilder
knitr
Packaged
2018-02-27 16:56:06 UTC; brettmcclintock
Repository
CRAN
Date/Publication
2018-02-27 17:33:15 UTC

install.packages('momentuHMM')

1.4.0

a month ago

Brett McClintock

GPL-3

Depends on

R (>= 2.10)

Imports

Rcpp, doParallel, foreach, numDeriv, CircStats, crawl, ggmap, ggplot2, mitools, moveHMM, raster, argosfilter, car, mvtnorm, boot, sp, MASS, Brobdingnag, gstat, conicfit, nleqslv, survival, qdapRegex, geosphere, LaplacesDemon, prodlim

Suggests

testthat, setRNG, knitr, splines, splines2

Discussions