msigdbr

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value pairs. Included are the original human gene symbols and Entrez IDs as well as the equivalents for various frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

Total

1,095

Last month

418

Last week

92

Average per day

14

Daily downloads

Total downloads

Description file content

Package
msigdbr
Type
Package
Title
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Version
6.2.1
Description
Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 , Liberzon et al. 2015 ) in a standard R data frame with key-value pairs. Included are the original human gene symbols and Entrez IDs as well as the equivalents for various frequently studied model organisms such as mouse, rat, pig, fly, and yeast.
License
MIT + file LICENSE
Encoding
UTF-8
URL
BugReports
https://github.com/igordot/msigdbr/issues
LazyData
true
Depends
R (>= 3.2.0), dplyr (>= 0.7.0), tibble
Imports
magrittr, rlang
Suggests
testthat, knitr, rmarkdown
RoxygenNote
6.1.0
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2018-10-09 16:14:28 UTC; id460
Author
Igor Dolgalev [aut, cre]
Maintainer
Igor Dolgalev
Repository
CRAN
Date/Publication
2018-10-09 21:50:02 UTC

install.packages('msigdbr')

6.2.1

9 days ago

https://github.com/igordot/msigdbr

Igor Dolgalev

MIT + file LICENSE

Depends on

R (>= 3.2.0), dplyr (>= 0.7.0), tibble

Imports

magrittr, rlang

Suggests

testthat, knitr, rmarkdown

Discussions