mvSLOUCH

Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F.Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>.

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Description file content

Package
mvSLOUCH
Type
Package
Title
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
Version
2.1.1
Date
2019-12-03
Author
Krzysztof Bartoszek
Maintainer
Krzysztof Bartoszek
Description
Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F.Hansen (2012) .
Depends
R(>= 3.1.2), abind
License
GPL (>= 2) | file LICENCE
LazyLoad
yes
Collate
bootstrap.R evolmodelest.R matrixexps.R phylgls.R sdecovariancephyl.R wrappers.R ci.R fitch.mvsl.R matrixparametrizations.R PhyloSDEestim.R sdemoments.R estimBM.R getESS.R modelparams.R phyltree_paths.R simulVasicekprocphyl.R estimGLSGC.R loglik.R modelparamssummary.R precalcs.R simulVasicekproc.R estimMAXLIK.R make.states.mvsl.R modelparamstransform.R regimes.R trees2slouch.mvsl.R
Imports
ape (>= 5.3), graphics, methods, mvtnorm, Matrix, matrixcalc, ouch, PCMBase (>= 1.2.10), stats
Suggests
PCMBaseCpp(>= 0.1.6)
NeedsCompilation
no
Repository
CRAN
Packaged
2019-12-05 21:41:06 UTC; kbart
Date/Publication
2019-12-06 06:10:08 UTC

install.packages('mvSLOUCH')

2.1.1

9 days ago

Krzysztof Bartoszek

GPL (>= 2) | file LICENCE

Depends on

R(>= 3.1.2), abind

Imports

ape (>= 5.3), graphics, methods, mvtnorm, Matrix, matrixcalc, ouch, PCMBase (>= 1.2.10), stats

Suggests

PCMBaseCpp(>= 0.1.6)

Discussions