nandb

Number and Brightness Image Analysis

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.

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Description file content

Package
nandb
Type
Package
Title
Number and Brightness Image Analysis
Version
2.0.4
Maintainer
Rory Nolan
URL
BugReports
https://github.com/rorynolan/nandb/issues
Description
Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper . The seminal paper for the technique is Digman et al. 2008 . A review of the technique was published in 2017 .
License
BSD_3_clause + file LICENSE
LazyData
TRUE
LinkingTo
Rcpp (>= 1.0.1)
Depends
R (>= 3.1)
Imports
Rcpp (>= 1.0.1), filesstrings (>= 3.1.5), magrittr (>= 1.5), autothresholdr (>= 1.3.3), dplyr, stringr (>= 1.2.0), purrr, checkmate (>= 1.9.3), detrendr (>= 0.6.2), ijtiff (>= 2.0.2), rlang (>= 0.3.3), reshape2, viridis, glue (>= 1.3.0), BBmisc, ggplot2, assertthat, withr (>= 2.1.0), utils
RoxygenNote
6.1.1
Suggests
knitr, rmarkdown, covr, testthat (>= 2.1.0), abind, tidyr, gridExtra, pacman, matrixStats (>= 0.50.0), spelling
VignetteBuilder
knitr
Encoding
UTF-8
Language
en-US
NeedsCompilation
yes
Packaged
2019-07-08 11:29:39 UTC; rnolan
Author
Rory Nolan [aut, cre, cph] (), Luis Alvarez [ctb, cph] (), Sergi Padilla-Parra [ctb, ths, cph] ()
Repository
CRAN
Date/Publication
2019-07-08 12:20:03 UTC

install.packages('nandb')

2.0.4

10 days ago

https://rorynolan.github.io/nandb

Rory Nolan

BSD_3_clause + file LICENSE

Depends on

R (>= 3.1)

Imports

Rcpp (>= 1.0.1), filesstrings (>= 3.1.5), magrittr (>= 1.5), autothresholdr (>= 1.3.3), dplyr, stringr (>= 1.2.0), purrr, checkmate (>= 1.9.3), detrendr (>= 0.6.2), ijtiff (>= 2.0.2), rlang (>= 0.3.3), reshape2, viridis, glue (>= 1.3.0), BBmisc, ggplot2, assertthat, withr (>= 2.1.0), utils

Suggests

knitr, rmarkdown, covr, testthat (>= 2.1.0), abind, tidyr, gridExtra, pacman, matrixStats (>= 0.50.0), spelling

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