nodiv

Compares the Distribution of Sister Clades Through a Phylogeny

An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. <DOI:10.1111/2041-210X.12283>. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.

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Description file content

Package
nodiv
Type
Package
Title
Compares the Distribution of Sister Clades Through a Phylogeny
Version
1.3.0
Date
2018-11-07
Author
Michael Krabbe Borregaard
Maintainer
Michael Krabbe Borregaard
Description
An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. . Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Depends
R (>= 3.0)
Imports
picante, raster, ape, sp, vegan, utils
Suggests
RColorBrewer, parallel, testthat, colorspace
License
MIT + file LICENSE
URL
NeedsCompilation
no
Packaged
2018-11-07 09:41:35 UTC; michael
Repository
CRAN
Date/Publication
2018-11-07 10:00:02 UTC

install.packages('nodiv')

1.3.0

10 days ago

https://github.com/mkborregaard/nodiv

Michael Krabbe Borregaard

MIT + file LICENSE

Depends on

R (>= 3.0)

Imports

picante, raster, ape, sp, vegan, utils

Suggests

RColorBrewer, parallel, testthat, colorspace

Discussions