onemap

Construction of Genetic Maps in Experimental Crosses: Full-Sib, RILs, F2 and Backcrosses

Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint approaches using hidden Markov models.

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Description file content

Package
onemap
Title
Construction of Genetic Maps in Experimental Crosses: Full-Sib, RILs, F2 and Backcrosses
Version
2.1.1
Description
Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) . All analysis are based on multipoint approaches using hidden Markov models.
Date
2017-10-17
Author
Gabriel Margarido [aut], Marcelo Mollinari [aut], Karl Broman [ctb], Rodrigo Amadeu [ctb], Cristiane Taniguti [ctb, cre], Augusto Garcia [aut, ctb]
LinkingTo
Rcpp (>= 0.10.5)
Depends
R (>= 3.4.0)
Imports
tcltk (>= 3.2.0), tkrplot (>= 0.0-23), ggplot2 (>= 2.2.1), fields (>= 8.3-5), reshape2 (>= 1.4.1), Rcpp (>= 0.10.5), graphics, methods, stats, utils, maps
Suggests
qtl (>= 1.36-6), knitr (>= 1.10), rmarkdown
VignetteBuilder
knitr
Encoding
UTF-8
License
GPL-3
URL
BugReports
https://github.com/augusto-garcia/onemap/wiki
Maintainer
Cristiane Taniguti
Repository
CRAN
Packaged
2017-10-18 22:25:43 UTC; cris
NeedsCompilation
yes
Date/Publication
2017-10-18 22:48:07 UTC
RoxygenNote
6.0.1

install.packages('onemap')

2.1.1

4 days ago

https://github.com/augusto-garcia/onemap

Cristiane Taniguti

GPL-3

Depends on

R (>= 3.4.0)

Imports

tcltk (>= 3.2.0), tkrplot (>= 0.0-23), ggplot2 (>= 2.2.1), fields (>= 8.3-5), reshape2 (>= 1.4.1), Rcpp (>= 0.10.5), graphics, methods, stats, utils, maps

Suggests

qtl (>= 1.36-6), knitr (>= 1.10), rmarkdown

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