pegas

Population and Evolutionary Genetics Analysis System

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

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Description file content

Package
pegas
Version
0.11
Date
2018-07-07
Title
Population and Evolutionary Genetics Analysis System
Depends
R (>= 2.6.0), ape (>= 2.4), adegenet
Imports
graphics, utils
Suggests
rgl
ZipData
no
Description
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
License
GPL (>= 2)
URL
NeedsCompilation
yes
Packaged
2018-07-09 09:10:12 UTC; paradis
Author
Emmanuel Paradis [aut, cre, cph], Thibaut Jombart [aut, cph], Knaus Brian [aut, cph], Klaus Schliep [aut, cph], Alastair Potts [aut, cph], David Winter [aut, cph], Zhian N. Kamvar [aut, cph]
Maintainer
Emmanuel Paradis
Repository
CRAN
Date/Publication
2018-07-09 10:30:08 UTC

install.packages('pegas')

0.11

7 days ago

http://ape-package.ird.fr/pegas.html

Emmanuel Paradis

GPL (>= 2)

Depends on

R (>= 2.6.0), ape (>= 2.4), adegenet

Imports

graphics, utils

Suggests

rgl

Discussions