phylin

Spatial Interpolation of Genetic Data

The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.

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Description file content

Package
phylin
Type
Package
Title
Spatial Interpolation of Genetic Data
Version
2.0
Date
2019-03-12
Author
Pedro Tarroso, Guillermo Velo-Anton, Silvia Carvalho
Maintainer
Pedro Tarroso
Suggests
geometry,raster,gdistance
Description
The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.
License
GPL (>= 2)
URL
NeedsCompilation
no
Packaged
2019-03-12 16:52:16 UTC; pedro
Repository
CRAN
Date/Publication
2019-03-13 13:50:06 UTC

install.packages('phylin')

2.0

10 days ago

https://www.r-project.org

Pedro Tarroso

GPL (>= 2)

Suggests

geometry,raster,gdistance

Discussions