picante

Integrating Phylogenies and Ecology

Functions for phylocom integration, community analyses, null-models, traits and evolution. Implements numerous ecophylogenetic approaches including measures of community phylogenetic and trait diversity, phylogenetic signal, estimation of trait values for unobserved taxa, null models for community and phylogeny randomizations, and utility functions for data input/output and phylogeny plotting. A full description of package functionality and methods are provided by Kembel et al. (2010) <doi:10.1093/bioinformatics/btq166>.

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Description file content

Package
picante
Type
Package
Title
Integrating Phylogenies and Ecology
Version
1.7
Date
2018-05-01
Author
Steven W. Kembel , David D. Ackerly , Simon P. Blomberg , Will K. Cornwell , Peter D. Cowan , Matthew R. Helmus , Helene Morlon , Campbell O. Webb
Maintainer
Steven W. Kembel
Depends
ape, vegan, nlme, methods
Suggests
brglm, circular, corpcor, quantreg
Description
Functions for phylocom integration, community analyses, null-models, traits and evolution. Implements numerous ecophylogenetic approaches including measures of community phylogenetic and trait diversity, phylogenetic signal, estimation of trait values for unobserved taxa, null models for community and phylogeny randomizations, and utility functions for data input/output and phylogeny plotting. A full description of package functionality and methods are provided by Kembel et al. (2010) .
License
GPL-2
NeedsCompilation
yes
Packaged
2018-05-14 15:17:00 UTC; steve
Repository
CRAN
Date/Publication
2018-05-14 18:39:57 UTC

install.packages('picante')

1.7

2 months ago

Steven W. Kembel

GPL-2

Depends on

ape, vegan, nlme, methods

Suggests

brglm, circular, corpcor, quantreg

Discussions