polymapR

Linkage Analysis in Outcrossing Polyploids

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a preprint manuscript of Bourke et al. (2017) <doi:10.1101/228817>.

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Description file content

Package
polymapR
Type
Package
Title
Linkage Analysis in Outcrossing Polyploids
Version
1.0.11
Date
2017-12-01
Description
Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a preprint manuscript of Bourke et al. (2017) .
Depends
R (>= 2.10)
License
GPL
Imports
igraph, doParallel, foreach, knitr, Rglpk, Matrix, combinat, RColorBrewer, reshape2, NMF, MDSMap
RoxygenNote
6.0.1
Suggests
rmarkdown, Hmisc, LPmerge
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2017-12-05 15:34:16 UTC; bourk001
Author
Peter Bourke [aut, cre], Geert van Geest [aut]
Maintainer
Peter Bourke
Repository
CRAN
Date/Publication
2017-12-05 18:39:06 UTC

install.packages('polymapR')

1.0.11

8 days ago

Peter Bourke

GPL

Depends on

R (>= 2.10)

Imports

igraph, doParallel, foreach, knitr, Rglpk, Matrix, combinat, RColorBrewer, reshape2, NMF, MDSMap

Suggests

rmarkdown, Hmisc, LPmerge

Discussions