popkin

Estimate Kinship and FST under Arbitrary Population Structure

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

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Description file content

Package
popkin
Title
Estimate Kinship and FST under Arbitrary Population Structure
Version
1.2.2
Description
Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) .
Depends
Imports
Rcpp (>= 0.12.10), RColorBrewer, graphics, grDevices
LinkingTo
Rcpp, RcppEigen
Suggests
BEDMatrix, testthat, knitr, rmarkdown, lfa
License
GPL-3
Encoding
UTF-8
LazyData
true
RoxygenNote
6.1.1.9000
VignetteBuilder
knitr
URL
BugReports
https://github.com/StoreyLab/popkin/issues
NeedsCompilation
yes
Packaged
2019-05-13 16:41:05 UTC; viiia
Author
Alejandro Ochoa [aut, cre] (), John D. Storey [aut] ()
Maintainer
Alejandro Ochoa
Repository
CRAN
Date/Publication
2019-05-13 17:10:33 UTC

install.packages('popkin')

1.2.2

10 days ago

https://github.com/StoreyLab/popkin/

Alejandro Ochoa

GPL-3

Imports

Rcpp (>= 0.12.10), RColorBrewer, graphics, grDevices

Suggests

BEDMatrix, testthat, knitr, rmarkdown, lfa

Discussions