sensiPhy

Sensitivity Analysis for Comparative Methods

An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).

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Description file content

Package
sensiPhy
Title
Sensitivity Analysis for Comparative Methods
Version
0.8.3
Date
2018-09-08
Maintainer
Gustavo Paterno
Description
An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).
Depends
R (>= 3.4.0), ape (>= 3.3), phylolm (>= 2.4), ggplot2 (>= 2.1.0)
Imports
caper (>= 0.5.2), phytools (>= 0.6), geiger (>= 2.0)
License
GPL-2
URL
BugReports
https://github.com/paternogbc/sensiPhy/issues
LazyData
true
RoxygenNote
6.0.1
Suggests
knitr, rmarkdown
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2018-09-11 12:30:02 UTC; paterno
Author
Gustavo Paterno [cre, aut], Gijsbert Werner [aut], Caterina Penone [aut], Pablo Martinez [ctb]
Repository
CRAN
Date/Publication
2018-09-11 12:50:02 UTC

install.packages('sensiPhy')

0.8.3

a month ago

https://github.com/paternogbc/sensiPhy

Gustavo Paterno

GPL-2

Depends on

R (>= 3.4.0), ape (>= 3.3), phylolm (>= 2.4), ggplot2 (>= 2.1.0)

Imports

caper (>= 0.5.2), phytools (>= 0.6), geiger (>= 2.0)

Suggests

knitr, rmarkdown

Discussions