seriation

Infrastructure for Ordering Objects Using Seriation

Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).

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Description file content

Package
seriation
Type
Package
Title
Infrastructure for Ordering Objects Using Seriation
Version
1.2-3
Date
2018-02-05
Description
Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).
Classification/ACM
G.1.6, G.2.1, G.4
URL
BugReports
https://github.com/mhahsler/seriation
Depends
R (>= 2.14.0)
Imports
TSP, qap, grid, cluster, gclus, dendextend, colorspace, MASS, gplots, registry, methods, stats, grDevices
Suggests
biclust, testthat, DendSer, GA
License
GPL-3
Copyright
The code in src/bea.f is Copyright (C) 1991 F. Murtagh; src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is Copyright (C) Michael Hahsler, Christian Buchta, and Kurt Hornik.
NeedsCompilation
yes
Packaged
2018-02-05 18:56:02 UTC; hahsler
Author
Michael Hahsler [aut, cre, cph], Christian Buchta [aut, cph], Kurt Hornik [aut, cph], Fionn Murtagh [ctb, cph], Michael Brusco [ctb, cph], Stephanie Stahl [ctb, cph], Hans-Friedrich Koehn [ctb, cph]
Maintainer
Michael Hahsler
Repository
CRAN
Date/Publication
2018-02-05 23:27:25 UTC

install.packages('seriation')

1.2-3

a year ago

http://lyle.smu.edu/IDA/seriation

Michael Hahsler

GPL-3

Depends on

R (>= 2.14.0)

Imports

TSP, qap, grid, cluster, gclus, dendextend, colorspace, MASS, gplots, registry, methods, stats, grDevices

Suggests

biclust, testthat, DendSer, GA

Discussions