spaMM
Mixed-Effect Models, Particularly Spatial Models
Inference based on mixed-effect models, including generalized linear mixed models with spatial correlations and models with non-Gaussian random effects (e.g., Beta). Both classical geostatistical models, and Markov random field models on irregular grids, can be fitted. Variation in residual variance (heteroscedasticity) can itself be represented by a generalized linear mixed model. Various approximations of likelihood or restricted likelihood are implemented, in particular h-likelihood (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) and Laplace approximation.
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Description file content
- Package
- spaMM
- Type
- Package
- Title
- Mixed-Effect Models, Particularly Spatial Models
- Encoding
- UTF-8
- Version
- 3.0.0
- Date
- 2019-06-21
- Maintainer
- François Rousset
- Imports
- methods, stats, graphics, Matrix, MASS, proxy, Rcpp (>= 0.12.10), nlme, nloptr, pbapply
- LinkingTo
- Rcpp, RcppEigen
- Suggests
- maps, testthat, lme4, rsae, rcdd, pedigreemm, minqa, lpSolveAPI (>= 5.5.0.14), foreach, multilevel, Infusion (>= 1.3.0), IsoriX (>= 0.8.1), blackbox (>= 1.1.25), gmp
- Depends
- R (>= 3.2.0)
- NeedsCompilation
- yes
- Description
- Inference based on mixed-effect models, including generalized linear mixed models with spatial correlations and models with non-Gaussian random effects (e.g., Beta). Both classical geostatistical models, and Markov random field models on irregular grids, can be fitted. Variation in residual variance (heteroscedasticity) can itself be represented by a generalized linear mixed model. Various approximations of likelihood or restricted likelihood are implemented, in particular h-likelihood (Lee and Nelder 2001
- License
- CeCILL-2
- URL
- RoxygenNote
- 6.0.1
- ByteCompile
- true
- Packaged
- 2019-06-21 07:04:01 UTC; Francois.rousset
- Author
- François Rousset [aut, cre, cph] (), Jean-Baptiste Ferdy [aut, cph], Alexandre Courtiol [aut] (), GSL authors [ctb] (src/gsl_bessel.*)
- Repository
- CRAN
- Date/Publication
- 2019-06-21 08:00:03 UTC
install.packages('spaMM')
3.0.0
27 days ago
François Rousset
CeCILL-2
Depends on
R (>= 3.2.0)
Imports
methods, stats, graphics, Matrix, MASS, proxy, Rcpp (>= 0.12.10), nlme, nloptr, pbapply
Suggests
maps, testthat, lme4, rsae, rcdd, pedigreemm, minqa, lpSolveAPI (>= 5.5.0.14), foreach, multilevel, Infusion (>= 1.3.0), IsoriX (>= 0.8.1), blackbox (>= 1.1.25), gmp