specmine

Metabolomics and Spectral Data Analysis and Mining

Provides a set of methods for metabolomics data analysis, including data loading in different formats, pre-processing, metabolite identification, univariate and multivariate data analysis, machine learning, feature selection and pathway analysis. Case studies can be found on the website: <http://darwin.di.uminho.pt/metabolomicspackage/index.html>. 'rcytoscapejs' is not present in a mainstream repository, but it can be obtained by typing 'devtools::install_github('cytoscape/r-cytoscape.js')' on the R command line.

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Description file content

Package
specmine
Type
Package
Title
Metabolomics and Spectral Data Analysis and Mining
Version
2.0.3
Date
2018-05-14
Author
Christopher Costa [aut], Marcelo Maraschin [aut], Miguel Rocha [aut, cre], Sara Cardoso [aut], Telma Afonso , C. Beleites [ctb], Jie Hao [ctb], Daniel Jacob [ctb]
Maintainer
Miguel Rocha
Depends
R (>= 3.4.0)
SystemRequirements
Python (>=3.5.2) and the following python modules: isatools, os, ftplib, glob, logging, pandas, tempfile, shutil, re, nmrglue.
Imports
compare, hyperSpec, readJDX, baseline, rgl, Metrics, GGally, ggplot2, ellipse, ggdendro, caret, pls, pcaPP, RColorBrewer, grid, methods, qdap, MASS, scatterplot3d, xcms, MAIT, genefilter, impute, igraph, KEGGgraph, KEGGREST, reticulate, gdata, speaq, devtools
Suggests
rcytoscapejs
Description
Provides a set of methods for metabolomics data analysis, including data loading in different formats, pre-processing, metabolite identification, univariate and multivariate data analysis, machine learning, feature selection and pathway analysis. Case studies can be found on the website: . 'rcytoscapejs' is not present in a mainstream repository, but it can be obtained by typing 'devtools::install_github('cytoscape/r-cytoscape.js')' on the R command line.
License
GPL (>= 2)
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2018-04-24 14:14:55 UTC; scardoso
Repository
CRAN
Date/Publication
2018-05-15 16:54:00 UTC

install.packages('specmine')

2.0.3

6 months ago

Miguel Rocha

GPL (>= 2)

Depends on

R (>= 3.4.0)

Imports

compare, hyperSpec, readJDX, baseline, rgl, Metrics, GGally, ggplot2, ellipse, ggdendro, caret, pls, pcaPP, RColorBrewer, grid, methods, qdap, MASS, scatterplot3d, xcms, MAIT, genefilter, impute, igraph, KEGGgraph, KEGGREST, reticulate, gdata, speaq, devtools

Suggests

rcytoscapejs

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