timeSeq

Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

A negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.

Total

8,728

Last month

538

Last week

99

Average per day

18

Daily downloads

Total downloads

Description file content

Package
timeSeq
Type
Package
Title
Detecting Differentially Expressed Genes in Time Course RNA-Seq Data
Version
1.0.4
Date
2019-2-08
Author
Fan Gao, Xiaoxiao Sun
Maintainer
Fan Gao
Description
A negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.
Depends
R (>= 3.0.1)
Imports
gss, mgcv, lattice, pheatmap, reshape, grDevices, graphics
License
GPL (>= 2)
Suggests
rmarkdown, knitr
VignetteBuilder
knitr
Repository
CRAN
NeedsCompilation
no
RoxygenNote
6.1.1.9000
Packaged
2019-02-09 05:16:16 UTC; xiaosun
Date/Publication
2019-02-09 05:50:03 UTC

install.packages('timeSeq')

1.0.4

12 days ago

Fan Gao

GPL (>= 2)

Depends on

R (>= 3.0.1)

Imports

gss, mgcv, lattice, pheatmap, reshape, grDevices, graphics

Suggests

rmarkdown, knitr

Discussions