SAVER

Single-Cell RNA-Seq Gene Expression Recovery

An implementation of a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. See Huang M, et al (2018) <doi:10.1038/s41592-018-0033-z> for more details.

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Description file content

Package
SAVER
Type
Package
Version
1.1.1
Title
Single-Cell RNA-Seq Gene Expression Recovery
Description
An implementation of a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. See Huang M, et al (2018) for more details.
Maintainer
Mo Huang
License
GPL-2
Encoding
UTF-8
LazyData
true
Depends
R (>= 3.0.1)
Imports
glmnet, foreach, methods, iterators, doParallel, Matrix
RoxygenNote
6.1.0
URL
BugReports
https://github.com/mohuangx/SAVER/issues
Suggests
knitr, rmarkdown
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2018-09-27 18:16:18 UTC; mohuang
Author
Mo Huang [aut, cre], Nancy Zhang [aut], Mingyao Li [aut]
Repository
CRAN
Date/Publication
2018-10-14 17:20:10 UTC

install.packages('SAVER')

1.1.1

a month ago

https://github.com/mohuangx/SAVER

Mo Huang

GPL-2

Depends on

R (>= 3.0.1)

Imports

glmnet, foreach, methods, iterators, doParallel, Matrix

Suggests

knitr, rmarkdown

Discussions