pammtools

Piece-Wise Exponential Additive Mixed Modeling Tools

The Piece-wise exponential (Additive Mixed) Model (PAMM; Bender and Scheipl (2018) <doi: 10.1177/1471082X17748083>) is a powerful model class for survival analysis, based on Generalized Additive (Mixed) Models (GA(M)Ms). It offers intuitive specification and robust estimation of complex survival models with stratified baseline hazards, random effects, time-varying effects, time-dependent covariates and cumulative effects (Bender et. al. (2018) <doi:10.1093/biostatistics/kxy003>. pammtools provides tidy workflow for survival analysis with PAMMs, including data transformation and other pre- and post-processing functions as well as visualization.

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Description file content

Package
pammtools
Title
Piece-Wise Exponential Additive Mixed Modeling Tools
Version
0.1.11
Date
2019-04-17
Description
The Piece-wise exponential (Additive Mixed) Model (PAMM; Bender and Scheipl (2018) ) is a powerful model class for survival analysis, based on Generalized Additive (Mixed) Models (GA(M)Ms). It offers intuitive specification and robust estimation of complex survival models with stratified baseline hazards, random effects, time-varying effects, time-dependent covariates and cumulative effects (Bender et. al. (2018) . pammtools provides tidy workflow for survival analysis with PAMMs, including data transformation and other pre- and post-processing functions as well as visualization.
Depends
R (>= 3.3.0)
Imports
mgcv, survival (>= 2.39-5), checkmate, magrittr, rlang, tidyr (>= 0.7.0), ggplot2, dplyr (>= 0.7.0), purrr (>= 0.2.3), tibble, msm, lazyeval, Formula, mvtnorm
Suggests
RColorBrewer, scam, coxme, testthat, timereg, knitr, rmarkdown, grid, gridExtra, covr, pkgdown
License
MIT + file LICENSE
LazyData
true
URL
BugReports
https://github.com/adibender/pammtools/issues
RoxygenNote
6.1.1
Encoding
UTF-8
NeedsCompilation
no
Packaged
2019-04-18 08:13:08 UTC; andreasb
Author
Andreas Bender [aut, cre] (), Fabian Scheipl [aut]
Maintainer
Andreas Bender
Repository
CRAN
Date/Publication
2019-04-18 08:30:03 UTC

install.packages('pammtools')

0.1.11

3 months ago

https://github.com/adibender/pammtools

Andreas Bender

MIT + file LICENSE

Depends on

R (>= 3.3.0)

Imports

mgcv, survival (>= 2.39-5), checkmate, magrittr, rlang, tidyr (>= 0.7.0), ggplot2, dplyr (>= 0.7.0), purrr (>= 0.2.3), tibble, msm, lazyeval, Formula, mvtnorm

Suggests

RColorBrewer, scam, coxme, testthat, timereg, knitr, rmarkdown, grid, gridExtra, covr, pkgdown

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