protViz

Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.

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Description file content

Package
protViz
Type
Package
Title
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Version
0.2.45
Author
Christian Panse [aut, cre] (0000-0003-1975-3064), Jonas Grossmann [aut] (0000-0002-6899-9020), Simon Barkow-Oesterreicher [ctb]
Maintainer
Christian Panse
Depends
R (>= 3.3), methods
Imports
Rcpp (>= 0.12.8)
LinkingTo
Rcpp
RcppModules
FastaMod
Suggests
lattice, RUnit, xtable
Description
Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.
License
GPL-3
URL
BugReports
https://github.com/protViz/protViz/issues
Collate
aa2mass.R deisotoper.R de_novo.R findNN.R fragmentIon.R genMod.R iTRAQ2GroupAnalysis.R lcmsmap.R mascot.R mdp.R parentIonMass.R peakplot.R pgImporter.R pgLFQ.R pp.R psm.R PTM_MarkerFinder.R ssrc.R zzz.R RcppExports.R protViz-package.R
Encoding
UTF-8
LazyData
true
NeedsCompilation
yes
Repository
CRAN
SystemRequirements
C++11
Packaged
2017-11-17 10:17:21 UTC; cp
Date/Publication
2017-11-17 10:51:48 UTC

install.packages('protViz')

0.2.45

24 days ago

https://github.com/protViz/protViz/

Christian Panse

GPL-3

Depends on

R (>= 3.3), methods

Imports

Rcpp (>= 0.12.8)

Suggests

lattice, RUnit, xtable

Discussions