ruv

Detect and Remove Unwanted Variation using Negative Controls

Implements the 'RUV' (Remove Unwanted Variation) algorithms. These algorithms attempt to adjust for systematic errors of unknown origin in high-dimensional data. The algorithms were originally developed for use with genomic data, especially microarray data, but may be useful with other types of high-dimensional data as well. These algorithms were proposed by Gagnon-Bartsch and Speed (2012), and by Gagnon-Bartsch, Jacob and Speed (2013). The algorithms require the user to specify a set of negative control variables, as described in the references. The algorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv', 'RUV-rinv', 'RUV-I', and RUV-III', along with various supporting algorithms.

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Description file content

Package
ruv
Title
Detect and Remove Unwanted Variation using Negative Controls
Description
Implements the 'RUV' (Remove Unwanted Variation) algorithms. These algorithms attempt to adjust for systematic errors of unknown origin in high-dimensional data. The algorithms were originally developed for use with genomic data, especially microarray data, but may be useful with other types of high-dimensional data as well. These algorithms were proposed by Gagnon-Bartsch and Speed (2012), and by Gagnon-Bartsch, Jacob and Speed (2013). The algorithms require the user to specify a set of negative control variables, as described in the references. The algorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv', 'RUV-rinv', 'RUV-I', and RUV-III', along with various supporting algorithms.
Version
0.9.7
Date
2018-03-12
Imports
stats, ggplot2, scales, gridExtra
Suggests
shiny, colourpicker
Author
Johann Gagnon-Bartsch
Maintainer
Johann Gagnon-Bartsch
License
GPL
URL
LazyLoad
yes
NeedsCompilation
yes
Packaged
2018-03-12 16:46:57 UTC; johann
Repository
CRAN
Date/Publication
2018-03-12 19:19:17 UTC

install.packages('ruv')

0.9.7

6 months ago

http://www-personal.umich.edu/~johanngb/ruv/

Johann Gagnon-Bartsch

GPL

Imports

stats, ggplot2, scales, gridExtra

Suggests

shiny, colourpicker

Discussions